| Item Name | Creator | Place | Dimensions | Comments | Catal.# | Classification | Period |
| Landing of Xavier in Dan no Ura | S. Uchiumi | * | 137x102cm | "kakejiku" | I-A1 | Japanese Painting | 1871- 1939 |
| The Mistery of Christ | Gyokko Machida | Tokyo | 195x126cm | * | I-A2 | Japanese Painting | Contemp. |
| Iruman Lorenzo | Gyokko Machida | Tokyo | 195x126cm | * | I-A3 | Japanese Painting | Contemp. |
| Yuki no Santa Maria | Namban Style Painter | Nagasaki | 21x28cm | * | I-A4 | Japanese Painting | 1600-1614 |
| Pipe of bamboo for "Yuki no Sta. Maria" | Kakure K. | Sotome (Shitsu) | 27x5.5cm | * | I-A4b | Japanese Painting | 1600 ~ |
| St. Francis Xavier | K. Kobayakawa | Kyoto | 220x133cm | (kakejiku paint on silk) | I-A5 | Japanese Painting | 1926/3/25 |
| Fr. Sebastian Vieira S.J. | Spain | Spain | 56x45cm | * | I-Ba 1 | Western Painting-Oil | 1600 ~ |
| St. Paul Miki | Spain | Spain | 70x57.5cm | * | I-Ba 2 | Western Painting-Oil | 1700 ~? |
| Gracia Hosokawa | Yasuteru Ueda | Kyoto | 119x94cm | * | I-Ba 3 | Western Painting-Oil | 1962 |
| Kirishitan Bell | Shoichiro Oki | * | 42x36cm | * | I-Ba 4 | Western Painting-Oil | 1967 |
| Mexican Franciscan Convent | J. Beteta | Mexico | 48x66cm | * | I-Ba 5 | Western Painting-Oil | contemp. |
| Indian Girl | Carmen Marrテウn | Mexico | 38x28cm | * | I-Ba 6 | Western Painting-Oil | 1958 |
| Mexico Popocatepel | Maestro Nテコテアez | Mexico | 33x38cm | * | I-Ba 7 | Western Painting-Oil | contemp. |
| Little Girl | E. Hernテ。ndez | Mexico | 60x50cm | * | I-Ba 8 | Western Painting-Oil | contemp. |
| Our Lady of Guadalupe | Luis Toral | Mexico | 166x104cm | * | I-Ba 9 | Western Painting-Oil | 1962 |
| The Castle of Oka | Paulo Faroni | * | 44x36cm | * | I-Ba10 | Western Painting-Oil | 1976 |
| Dawn in Nishizaka | Toshio Kobayashi | * | 89x105.5cm | * | I-Ba11 | Western Painting-Oil | 1976 |
| Minamiyamate | Toshio Kobayashi | Nagasaki | 49x59cm | * | I-Ba12 | Western Painting-Oil | 1957 |
| Nuestra Seテアora de Gracia | * | Spain | 7x5.7cm | copper | I-Ba13 | Western Painting-Oil | 1600 ~ |
| Landscape | G. Hernテ。ndez | Mexico | 45x55cm | * | I-Ba14 | Western Painting-Oil | contemp. |
| Nishizaka | Marcel Capellades | Funamori(Gotoo) | 32x41cm | * | I-Ba15 | Western Painting-Oil | contemp. |
| Bodegテウn | Paquita Sabrafen | Nagasaki | 60x50cm | * | I-Ba16 | Western Painting-Oil | 1988 |
| The Night of the Martyrdom | Hidekatsu Nakata | Nagasaki | 37x45.5cm | * | I-Ba17 | Western Painting-Oil | contemp. |
| Claudio Aquaviva S.J. | author unknown | Madrid? | 45x35.3cm | * | I-Ba18 | Western Painting-Oil | 1700 ~ |
| 26 Seijin | Fuchigami | Nagasaki | * | * | I-Ba19 | Western Painting-Oil | 1963 |
| Mucio Vitelleschi | author unknown | Madrid | 44.8x35.2cm | * | I-Ba19 | Western Painting-Oil | 1700 ~ |
| 26 Martyrs Shrine | Kenji Imai | * | 47x62.5cm | pastel | I-Bb1 | Western Painting-Pastel | 1960 |
| Itoo Mancio | Shin Hayasaka | * | * | pastel | I-Bb2 | Western Painting-Pastel | contemp |
| Bl. Nakaura Julian | Shin Hayasaka | * | * | pastel | I-Bb3 | Western Painting-Pastel | 1988 |
| Miguel Chijiwa | Shin Hayasaka | * | * | pastel | I-Bb4 | Western Painting-Pastel | 1988 |
| Hara Martino | Shin Hayasaka | * | * | pastel | I-Bb5 | Western Painting-Pastel | 1988 |
| Fr. Diogo Mesquita | Shin Hayasaka | * | * | pastel | I-Bb6 | Western Painting-Pastel | 1988 |
| Fr. Alexandro Valignano | Shin Hayasaka | * | * | pastel | I-Bb7 | Western Painting-Pastel | 1988 |
| Capitan Major | Shin Hayasaka | * | * | pastel | I-Bb8 | Western Painting-Pastel | 1988 |
| One companion | Shin Hayasaka | * | * | pastel | I-Bb9 | Western Painting-Pastel | 1988 |
| St. John Gotoo | Yasutake Funakoshi | * | 55x53cm | sketch | I-Bc1 | Western Painting-Sketch | contemp. |
| St. Paul Miki | Yasutake Funakoshi | * | 37x27cm | sketch | I-Bc2 | Western Painting-Sketch | contemp. |
| St. Philip of Jesus | Yasutake Funakoshi | * | 37x27cm | sketch | I-Bc3 | Western Painting-Sketch | contemp. |
| St. Ludovico Ibaragi | Yasutake Funakoshi | * | 37x27cm | sketch | I-Bc4 | Western Painting-Sketch | contemp. |
| Hands in prayer | Yasutake Funakoshi | * | 37x27cm | sketch | I-Bc5 | Western Painting-Sketch | contemp. |
| Takayama Ukon | Yasutake Funakoshi | * | * | sketch | I-Bc6 | Western Painting-Sketch | contemp. |
| No no Hana to Sei Tomas Kozaki | Maria Oka | * | 39x53cm | sketch | I-Bc7 | Western Painting-Sketch | 1992 |
| Sei Paulo Miki | Seiko Sawada | * | 153x96cm | sketch | I-Bc8 | Western Painting-Sketch | 1962 |
| The 26 Martyrs | Y. Akuzawa | * | 41x37cm | wood block print | I-Caa 1 | Printed Painting-Monochrome | 1962 |
| St. Francisco | Y. Akuzawa | * | 41x37cm | wood block print | I-Caa 2 | Printed Painting-Monochrome | 1962 |
| S. Cosme Takeya | Y. Akuzawa | * | 41x37cm | wood block print | I-Caa 3 | Printed Painting-Monochrome | 1962 |
| S. Pedro Sukejiro | Y. Akuzawa | * | 41x37cm | wood block print | I-Caa 4 | Printed Painting-Monochrome | 1962 |
| S. Miguel Kozaki | Y. Akuzawa | * | 41x37cm | wood block print | I-Caa 5 | Printed Painting-Monochrome | 1962 |
| S. Diego Kisai | Y. Akuzawa | * | 41x37cm | wood block print | I-Caa 6 | Printed Painting-Monochrome | 1962 |
| S. Paulo Miki | Y. Akuzawa | * | 41x37cm | wood block print | I-Caa 7 | Printed Painting-Monochrome | 1962 |
| S. Paulo Ibaragi | Y. Akuzawa | * | 41x37cm | wood block print | I-Caa 8 | Printed Painting-Monochrome | 1962 |
| S. Joao Gotoo | Y. Akuzawa | * | 41x37cm | wood block print | I-Caa 9 | Printed Painting-Monochrome | 1962 |
| S. Luis Ibaragi | Y. Akuzawa | * | 41x37cm | wood block print | I-Caa10 | Printed Painting-Monochrome | 1962 |
| S. Antonio | Y. Akuzawa | * | 41x37cm | wood block print | I-Caa11 | Printed Painting-Monochrome | 1962 |
| S. Pedro Bautista | Y. Akuzawa | * | 41x37cm | wood block print | I-Caa12 | Printed Painting-Monochrome | 1962 |
| S .Martテュn de la Ascensiテウn | Y. Akuzawa | * | 41x37cm | wood block print | I-Caa13 | Printed Painting-Monochrome | 1962 |
| S. Felipe de Jesテコs | Y. Akuzawa | * | 41x37cm | wood block print | I-Caa14 | Printed Painting-Monochrome | 1962 |
| S. Gonzalo Garcテュa | Y. Akuzawa | * | 41x27cm | wood block print | I-Caa15 | Printed Painting-Monochrome | 1962 |
| S. Francisco Blanco | Y. Akuzawa | * | 41x37cm | wood block print | I-Caa16 | Printed Painting-Monochrome | 1962 |
| S. Francisco de San Miguel | Y. Akuzawa | * | 41x37cm | wood block print | I-Caa17 | Printed Painting-Monochrome | 1962 |
| S. Matias | Y. Akuzawa | * | 41x37cm | wood block print | I-Caa18 | Printed Painting-Monochrome | 1962 |
| S. Leo Karasumaru | Y. Akuzawa | * | 41x37cm | wood block print | I-Caa19 | Printed Painting-Monochrome | 1962 |
| S. Bonaventura | Y. Akuzawa | * | 41x37cm | wood block print | I-Caa20 | Printed Painting-Monochrome | 1962 |
| S. Tomas Kozaki | Y. Akuzawa | * | 41x37cm | wood block print | I-Caa21 | Printed Painting-Monochrome | 1962 |
| S. Joachim Sakakibara | Y. Akuzawa | * | 41x37cm | wood block print | I-Caa22 | Printed Painting-Monochrome | 1962 |
| S. Francisco Ishi | Y. Akuzawa | * | 41x37cm | wood block print | I-Caa23 | Printed Painting-Monochrome | 1962 |
| S. Tomas Dangi | Y. Akuzawa | * | 41x37cm | wood block print | I-Caa24 | Printed Painting-Monochrome | 1962 |
| S. Joao Kinuya | Y. Akuzawa | * | 41x37cm | wood block print | I-Caa25 | Printed Painting-Monochrome | 1962 |
| S. Gabriel | Y. Akuzawa | * | 41x37cm | wood block print | I-Caa26 | Printed Painting-Monochrome | 1962 |
| S. Paulo Suzuki | Y. Akuzawa | * | 41x37cm | wood block print | I-Caa27 | Printed Painting-Monochrome | 1962 |
| St. Francis Xavier | Y. Akuzawa | * | 185x185cm | wood block pr. (kakejiku) | I-Caa28 | Printed Painting-Monochrome | Contemp. |
| Nagasaki | Ken Tagawa | * | 27.5x37cm | wood block print | I-Caa29 | Printed Painting-Monochrome | 1954 |
| Takayama Ukon | Y. Akuzawa | * | 185x185cm | wood block print | I-Caa30 | Printed Painting-Monochrome | Contemp. |
| Amakusa Shiroo | Y. Akuzawa |
| 185x185cm | wood block print | I-Caa31 | Printed Painting-Monochrome | Contemp |
| Gracia Hosokawa | Y. Akuzawa | * | 370x185cm | wood block print | I-Caa32 | Printed Painting-Monochrome | Contemp. |
| Tensho Shonen Shisetsu | Y. Akuzawa | * | 92.5(x4)x18.5cm | wood bl. pr. | I-Caa33 | Printed Painting-Monochrome | Contemp. |
| The 26 Martyrs | Y. Akuzawa | * | 92.5(x6)x185+92.5cm | wood bl. pr. | I-Caa34 | Printed Painting-Monochrome | cont. |
| Fumie | Y. Akuzawa | * | 185x185cm | wood block print | I-Caa35 | Printed Painting-Monochrome | c.1965 |
| Gracia Hosokawa | Shozai Ginkoo | * | 34.5x33.3 | wood bl. pr. color | I-Cab1 | Printed Painting-Color | 1886-7 |
| Nippon no Maria no Tera | Ken Tagawa | * | 23.5x27.5cm | wood bl. pr. color | I-Cab2 | Printed Painting-Color | 1960 |
| Nagasaki no Sinagoga | Ken Tagawa | * | 23.5x20cm | wood bl. pr. color | I-Cab3 | Printed Painting-Color | cont. |
| B. Franciscus a S.Michaele | Spain | * | 15x10cm | * | I-Cb 1 | Printed Painting-Copper Plate | 1600 ~ |
| B. Gonsalvus Garzia | Spain | * | 15x10cm | * | I-Cb 2 | Printed Painting-Copper Plate | 1600 ~ |
| B. Philippus a Jesu | Spain | * | 15x10cm | * | I-Cb 3 | Printed Painting-Copper Plate | 1600 ~ |
| B. Leo Carazuma | Spain | * | 15x10cm | * | I-Cb 4 | Printed Painting-Copper Plate | 1600 ~ |
| Franciscus Blanco | Spain | * | 15x10cm | * | I-Cb 5 | Printed Painting-Copper Plate | 1600 ~ |
| The 23 Franciscans Saints | Jacques Callot | * | 16.7x11.3cm | * | I-Cb 6 | Printed Painting-Copper Plate | c. 1627 |
| Dejima | Sigr. Voogt | Italy | 21.5x19cm | * | I-Cb 7 | Printed Painting-Copper Plate | 1600 ~ |
| Nagasaki Dejima | Lemaitre | France | 19.5x12.5cm | * | I-Cb 8 | Printed Painting-Copper Plate | 1800 ~ |
| View of Miyako | France | * | 54x44.5cm | * | I-Cb 9 | Printed Painting-Copper Plate | 1700 ~ |
| San Felipe de Jesテコs | Montes de Oca | Mexico | 16x13cm | (serie of 19 units) | I-Cb10 | Printed Painting-Copper Plate | 1801 |
| San Felipe de Jesテコs-birth | Montes de Oca | Mexico | 16x13cm | * | I-Cb11 | Printed Painting-Copper Plate | 1801 |
| San Felipe de Jesテコs-Baptism | Montes de Oca | Mexico | 16x13cm | * | I-Cb12 | Printed Painting-Copper Plate | 1801 |
| San Felipe de Jesテコs-Enter the convent in Puebla | Montes de Oca | Mexico | 16x13cm | * | I-Cb13 | Printed Painting-Copper Plate | 1801 |
| San Felipe de Jesテコs-Receives the habit | Montes de Oca | Mexico | 16x13cm | * | I-Cb14 | Printed Painting-Copper Plate | 1801 |
| San Felipe de Jesテコs-Leaves the Convent | Montes de Oca | Mexico | 16x13cm | * | I-Cb15 | Printed Painting-Copper Plate | 1801 |
| San Felipe de Jesテコs-Goes to Philippines | Montes de Oca | Mexico | 16x13cm | * | I-Cb16 | Printed Painting-Copper Plate | 1801 |
| San Felipe de Jesテコs-Profession | Montes de Oca | Mexico | 16x13cm | * | I-Cb17 | Printed Painting-Copper Plate | 1801 |
| San Felipe de Jesテコs-Life of prayer | Montes de Oca | Mexico | 16x13cm | * | I-Cb18 | Printed Painting-Copper Plate | 1801 |
| San Felipe de Jesテコs-Penance | Montes de Oca | Mexico | 16x13cm | * | I-Cb19 | Printed Painting-Copper Plate | 1801 |
| San Felipe de Jesテコs-Takes care Of the sick | Montes de Oca | Mexico | 16x13cm | * | I-Cb20 | Printed Painting-Copper Plate | 1801 |
| San Felipe de Jesテコs-In the way to Kyoto | Montes de Oca | Mexico | 16x13cm | * | I-Cb21 | Printed Painting-Copper Plate | 1801 |
| San Felipe de Jesテコs-Arrival to Nishizaka | Montes de Oca | Mexico | 16x13cm | * | I-Cb22 | Printed Painting-Copper Plate | 1801 |
| San Felipe de Jesテコs-Crucified | Montes de Oca | Mexico | 16x13cm | * | I-Cb23 | Printed Painting-Copper Plate | 1801 |
| San Felipe de Jesテコs-Taken from the cross | Montes de Oca | Mexico | 16x13cm | * | I-Cb24 | Printed Painting-Copper Plate | 1801 |
| San Felipe de Jesテコs-Miracle of the tree | Montes de Oca | Mexico | 16x13cm | * | I-Cb25 | Printed Painting-Copper Plate | 1801 |
| San Felipe de Jesテコs-Comforts his Mother | Montes de Oca | Mexico | 16x13cm | * | I-Cb26 | Printed Painting-Copper Plate | 1801 |
| San Felipe de Jesテコs-Death of Antonia Martテュnez | Montes de Oca | Mexico | 16x13cm | * | I-Cb27 | Printed Painting-Copper Plate | 1801 |
| San Felipe de Jesテコs-Beatification | Montes de Oca | Mexico | 16x13cm | * | I-Cb28 | Printed Painting-Copper Plate | 1801 |
| San Felipe de Jesテコs-Glorification | Montes de Oca | Mexico | 16x13cm | * | I-Cb29 | Printed Painting-Copper Plate | 1801 |
| Our Lady with Saints | * | * | 59x35.5cm | * | I-Cb30 | Printed Painting-Copper Plate | * |
| Nuestra Seテアora de la Antigua | Sevilla | * | 15x20cm | * | I-Cb31 | Printed Painting-Copper Plate | 1800 ~ |
| Blessed Caracciolo in Loreto | Spain | * | 17x12cm | * | I-Cb32 | Printed Painting-Copper Plate | 1700 ~ |
| Death of St. Francis Xavier | Joseph Petrarca | * | 28x20.5cm | * | I-Cb33 | Printed Painting-Copper Plate | 1800 ~ |
| St. Aloysius Gonzaga | Jos繝サSeveroni | * | 40x21.5cm | * | I-Cb34 | Printed Painting-Copper Plate | 1800 ~ |
| St. Ignatius of Loyola | * | * | * | * | I-Cb35 | Printed Painting-Copper Plate | 1700 ~ |
| Hollands Admirals Schip van 96 Stukken Kanon | Cornelis Dankerts | Amsterdam | 52x62cm | * | I-Cb36 | Printed Painting-Copper Plate | * |
| O encontro Portugal-Japテウn | * | Portugal | 73x60cm | * | I-Cb37 | Printed Painting-Copper Plate | 1990 |
| Fourth Centennial of St. Pauls University-Macau | James Wong | Macau | 43.5x25cm | * | I-Cb38 | Printed Painting-Copper Plate | 1994 |
| The battle of Hamaguri | * | * | 22x43.5cm | Tile block print | I-Cc1 | Printed Painting-Tile | 1864 |
| The Martyrdom of the three Jesuit Saints | Pietro Gagliardi | Italy | 43.5x30cm | (2 pieces) | I-Cd1 | Printed Painting-Lithography | 1862 |
| The old Castle | Ko-ka-ho | * | 47x27.4cm | (Kakejiku) | I-D1 | Painting-Calligraphy | 1807-18 |
| Martyrdom | Koo Ryoo | Nagasaki | 34x66cm | * | I-D2 | Painting-Calligraphy | 1962 |
| The sign of the Cross | Kenji Imai | * | * | Ootake st. glass 6 pieces | I-E 1 | Painting-Stained Glass | 1965 |
| Emblem of Loyola Family | * | * | * | * | I-E 2 | Painting-Stained Glass | * |
| Emblem of Xavier Family | * | * | * | * | I-E 3 | Painting-Stained Glass | * |
| Cross of San Andrテゥs | * | * | * | * | I-E 4 | Painting-Stained Glass | * |
| Cross of Portugal | * | * | * | * | I-E 5 | Painting-Stained Glass | * |
| Kirisitan Name of Jesus | * | * | * | * | I-E 6 | Painting-Stained Glass | * |
| St. Francis Xavier | * | * | * | * | I-E 7 | Painting-Stained Glass | * |
| Our Lady of the Camellia | * | * | * | * | I-E 8 | Painting-Stained Glass | * |
| Confraternity of The Blessed Sacrament (battle flag Shimabara Reb) | * | * | * | * | I-E 9 | Painting-Stained Glass | * |
| Prince Henry the Navigator | * | * | * | * | I-E10 | Painting-Stained Glass | * |
| Camellia flower | Toshimitsu Honda | * | * | * | I-E11 | Painting-Stained Glass | * |
| Plum flower | Toshimitsu Honda | * | * | * | I-E12 | Painting-Stained Glass | * |
| St. Felipe de Jesテコs | Francisco Borboa | Taiwan (Mexico) | 90x56cm | Mosaic | I-F1 | Painting-Other | 1963 |